Template function for building scRNA-Seq data objects

This function builds an ExpressionSet, Seurat, or SingleCellExperiment object with scRNA data

template_scprep(dir_output = dir_output)

Arguments

dir_output

Output directory for analysis results

Value

ExpressionSet, Seurat, or SingleCellExperiment object (depending on output_type parameter)

Examples

# Build ExpressionSet (default)
template_scprep(dir_output="/path/to/output")
#> 2025-09-05 23:35:51 
#> Initiate Preparation of scRNA-Seq Data 
#> Warning: cannot open file '/path/to/output/scprep_parameters.csv': No such file or directory
#> Error in file(file, "rt"): cannot open the connection
# Output type can be specified in scprep_parameters.csv